PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013635399.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 244aa    MW: 26219.2 Da    PI: 7.9881
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013635399.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.62e-38151151100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkCa+dC++apyf +eq +++fa++hk+FGasnv+kll ++p ++r +a+ +++yeA+ar++dPvyG+v++i++lqqq++ l+a++
  XP_013635399.1  15 PCGACKFLRRKCASDCIFAPYFSSEQgAARFAAIHKVFGASNVSKLLLNVPIHDRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAYLQAQV 109
                     7***********************9989******************************************************************9 PP

          DUF260  95 allkee 100
                      ++k++
  XP_013635399.1 110 MQMKAQ 115
                     999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.88514116IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-3715113IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MATSGNGTTA GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL  60
LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ QVAYLQAQVM QMKAQIAGHQ  120
TSAAGDLRNS SGNTHEFTTW QQSSGSPICC AYATPYDHHH PYYGHVNPNN QVSPQSSLEE  180
SLSSTSSNVT TTANVRESHQ TGGGVYGHGG LGFHEGYPNK KRSVNYCNSD LGELQALALR  240
MMKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738510.0AB473851.1 Arabidopsis thaliana ASL18 mRNA for ASYMMETRIC LEAVES2-like 18 protein, complete cds.
GenBankAF3453390.0AF345339.1 Arabidopsis thaliana MHK10.15/At2g42430 mRNA, complete cds.
GenBankAF4103340.0AF410334.1 Arabidopsis thaliana At2g42430/MHK10.15 mRNA, complete cds.
GenBankAF4478900.0AF447890.1 Arabidopsis thaliana LOB DOMAIN 16 (LBD16) mRNA, complete cds.
GenBankBT0008660.0BT000866.1 Arabidopsis thaliana At2g42430/MHK10.15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635399.10.0PREDICTED: LOB domain-containing protein 16
SwissprotQ9SLB71e-165LBD16_ARATH; LOB domain-containing protein 16
TrEMBLA0A078JD180.0A0A078JD18_BRANA; BnaC04g52730D protein
TrEMBLA0A0D3BPB60.0A0A0D3BPB6_BRAOL; Uncharacterized protein
STRINGAT2G42430.11e-163(Arabidopsis thaliana)
STRINGscaffold_403099.11e-163(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.11e-111lateral organ boundaries-domain 16